| Authors: | Weggler, S. and Rutka, V. and Hildebrandt, A. |
| Title: | A new numerical method for nonlocal electrostatics in biomolecular simulations |
| Journal: | JOURNAL OF COMPUTATIONAL PHYSICS |
| Year: | 2010 |
| Vol.: | 229 |
| No.: | 11 |
| pp.: | 4059-4074 |
| Authors: | Cheung, Alexander S. and Kieslich, Chris A. and Yang, Jianfeng and Morikis, Dimitrios |
| Title: | Solvation Effects in Calculated Electrostatic Association Free Energies for the C3d-CR2 Complex and Comparison with Experimental Data |
| Journal: | BIOPOLYMERS |
| Year: | 2010 |
| Vol.: | 93 |
| No.: | 6 |
| pp.: | 509-519 |
| Authors: | Ye, Xiang and Wang, Jun and Luo, Ray |
| Title: | A Revised Density Function for Molecular Surface Calculation in Continuum Solvent Models |
| Journal: | JOURNAL OF CHEMICAL THEORY AND COMPUTATION |
| Year: | 2010 |
| Vol.: | 6 |
| No.: | 4 |
| pp.: | 1157-1169 |
| Authors: | Xu, Zhenli |
| Title: | Treecode algorithm for pairwise electrostatic interactions with solvent-solute polarization |
| Journal: | PHYSICAL REVIEW E |
| Year: | 2010 |
| Vol.: | 81 |
| No.: | 2, Part 1 |
| Authors: | Cai, Qin and Hsieh, Meng-Juei and Wang, Jun and Luo, Ray |
| Title: | Performance of Nonlinear Finite-Difference Poisson-Boltzmann Solvers |
| Journal: | JOURNAL OF CHEMICAL THEORY AND COMPUTATION |
| Year: | 2010 |
| Vol.: | 6 |
| No.: | 1 |
| pp.: | 203-211 |
| Authors: | Fenley, Marcia O. and Mascagni, Michael and McClain, James and Silalahi, Alexander R. J. and Simonov, Nikolai A. |
| Title: | Using Correlated Monte Carlo Sampling for Efficiently Solving the Linearized Poisson-Boltzmann Equation Over a Broad Range of Salt Concentration |
| Journal: | JOURNAL OF CHEMICAL THEORY AND COMPUTATION |
| Year: | 2010 |
| Vol.: | 6 |
| No.: | 1 |
| pp.: | 300-314 |
| Authors: | Basilevsky, Mikhail V. and Grigoriev, Fedor V. and Nikitina, Ekaterina A. and Leszczynski, Jerzy |
| Title: | Implicit Electrostatic Solvent Model with Continuous Dielectric Permittivity Function |
| Journal: | JOURNAL OF PHYSICAL CHEMISTRY B |
| Year: | 2010 |
| Vol.: | 114 |
| No.: | 7 |
| pp.: | 2457-2466 |
| Authors: | Koehl, Patrice and Delarue, Marc |
| Title: | AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation |
| Journal: | JOURNAL OF CHEMICAL PHYSICS |
| Year: | 2010 |
| Vol.: | 132 |
| No.: | 6 |
| Authors: | Wang, Jun and Tan, Chunhu and Chanco, Emmanuel and Luo, Ray |
| Title: | Quantitative analysis of Poisson-Boltzmann implicit solvent in molecular dynamics |
| Journal: | PHYSICAL CHEMISTRY CHEMICAL PHYSICS |
| Year: | 2010 |
| Vol.: | 12 |
| No.: | 5 |
| pp.: | 1194-1202 |
| Authors: | Qin, Peihua and Xu, Zhenli and Cai, Wei and Jacobs, Donald |
| Title: | Image Charge Methods for a Three-Dielectric-Layer Hybrid Solvation Model of Biomolecules |
| Journal: | COMMUNICATIONS IN COMPUTATIONAL PHYSICS |
| Year: | 2009 |
| Vol.: | 6 |
| No.: | 5 |
| pp.: | 955-977 |
| Authors: | Bardhan, Jaydeep P. and Eisenberg, Robert S. and Gillespie, Dirk |
| Title: | Discretization of the induced-charge boundary integral equation |
| Journal: | PHYSICAL REVIEW E |
| Year: | 2009 |
| Vol.: | 80 |
| No.: | 1, Part 1 |
| Authors: | Baptista, M. and Schmitz, R. and Duenweg, B. |
| Title: | Simple and robust solver for the Poisson-Boltzmann equation |
| Journal: | PHYSICAL REVIEW E |
| Year: | 2009 |
| Vol.: | 80 |
| No.: | 1, Part 2 |
| Authors: | Xu, Zhenli and Cai, Wei |
| Title: | Fast Spectral Collocation Method for Surface Integral Equations of Potential Problems in a Spheroid |
| Journal: | COMMUNICATIONS IN COMPUTATIONAL PHYSICS |
| Year: | 2009 |
| Vol.: | 6 |
| No.: | 3 |
| pp.: | 625-638 |
| Authors: | Cai, Qin and Wang, Jun and Zhao, Hong-Kai and Luo, Ray |
| Title: | On removal of charge singularity in Poisson-Boltzmann equation |
| Journal: | JOURNAL OF CHEMICAL PHYSICS |
| Year: | 2009 |
| Vol.: | 130 |
| No.: | 14 |
| Authors: | Li, Peijun and Johnston, Hans and Krasny, Robert |
| Title: | A Cartesian treecode for screened coulomb interactions |
| Journal: | JOURNAL OF COMPUTATIONAL PHYSICS |
| Year: | 2009 |
| Vol.: | 228 |
| No.: | 10 |
| pp.: | 3858-3868 |
| Authors: | Cai, Wei and Xu, Zhenli and Baumketner, Andrij |
| Title: | A new FFF-based algorithm to compute Born radii in the generalized Born theory of biomolecule solvation |
| Journal: | JOURNAL OF COMPUTATIONAL PHYSICS |
| Year: | 2008 |
| Vol.: | 227 |
| No.: | 24 |
| pp.: | 10162-10177 |