Volume 3, Number 5

Editorial Board.
Commun. Comput. Phys., No. 5, 3 (2008).

Articles in the Issue:

Review Articles:
  

B. Z. Lu, Y. C. Zhou, M. J. Holst and J. A. McCammon
Recent progress in numerical methods for the Poisson-Boltzmann equation in biophysical applications.
Commun. Comput. Phys., 3 (2008), pp. 973-1009.
Published Online: January 24, 2008. Abstract

 

Full Article
[An open-access article; the PDF is free to any online user.]    
   
Jun Wang, Chunhu Tan, Yu-Hong Tan, Qiang Lu and Ray Luo
Poisson-Boltzmann solvents in molecular dynamics simulations.
Commun. Comput. Phys., 3 (2008), pp. 1010-1031.
Published Online: January 24, 2008. Abstract 		 

Full Article
   
Regular Articles:  
Xinwei Shi and Patrice Koehl
The geometry behind numerical solvers of the Poisson-Boltzmann equation.
Commun. Comput. Phys., 3 (2008), pp. 1032-1050.
Published Online: January 24, 2008. Abstract 		 

Full Article
   
Johan H. Bredenberg, Alexander H. Boschitsch and Marcia O. Fenley
The role of anionic protein residues on the salt dependence of the binding of aminoacyl-tRNA synthetases to tRNA: A Poisson-Boltzmann analysis.
Commun. Comput. Phys., 3 (2008), pp. 1051-1070.
Published Online: January 25, 2008. Abstract 		 

Full Article
   

Kemper Talley, Petras Kundrotas and Emil Alexov
Modeling salt dependence of protein-protein association: Linear vs non-linear Poisson-Boltzmann equation.
Commun. Comput. Phys., 3 (2008), pp. 1071-1086.
Published Online: January 25, 2008. Abstract

 

Full Article
   

Moran Wang and Shiyi Chen
On applicability of Poisson-Boltzmann equation for micro- and nanoscale electroosmotic flows.
Commun. Comput. Phys., 3 (2008), pp. 1087-1099.
Published Online: January 29, 2008. Abstract

 

Full Article
   

A. Sayyed-Ahmad, Y. Miao and P. Ortoleva
Poisson-Boltzmann theory of bionanosystems.
Commun. Comput. Phys., 3 (2008), pp. 1100-1116.
Published Online: February 18, 2008. Abstract

 

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J. Ambia-Garrido and B. Montgomery Pettitt
Free energy calculations for DNA near surfaces using an ellipsoidal geometry.
Commun. Comput. Phys., 3 (2008), pp. 1117-1131.
Published Online: February 18, 2008. Abstract

 

Full Article
   

Johan H. Bredenberg and Marcia O. Fenley
Salt dependent association of novel mutants of TATA-binding proteins to DNA: Predictions from theory and experiments.
Commun. Comput. Phys., 3 (2008), pp. 1132-1153.
Published Online: February 18, 2008. Abstract

 

Full Article
   
Author index to volume 3
Commun. Comput. Phys., 3 (2008), pp. 1154-1155. 		 

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