Application of Modern Intelligent Algorithms in Retrosynthesis Prediction

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DOI:

https://doi.org/10.4208/cicc.2025.153.01

Keywords:

artificial intelligence, retrosynthesis prediction, machine learning, deep learning

Abstract

In recent years, the rapid advancements in computer science have spurred the development of various cutting-edge intelligent algorithms. Among these, the transformer, which is built upon a multi-head attention mechanism, is one of the most prominent AI models. The advent of such algorithms has significantly advanced retrosynthesis prediction, though challenges remain in chemical interpretability and real-world deployment. Unlike traditional models, AI-based retrosynthesis prediction systems can automatically extract chemical knowledge from vast datasets to forecast retrosynthesis pathways. This review provides a comprehensive overview of modern intelligent algorithms applied to retrosynthesis prediction, with a particular focus on artificial intelligence techniques. We begin by discussing key deep learning models, then explore available chemical reaction datasets and molecular representations. The discussion extends to the latest state-of-the art in AI-assisted retrosynthesis models, including template-based, template-free, and semi-template-based approaches. Finally, we compare these models across various classifications, highlighting several challenges and limitations of current methods, and suggesting promising directions for future research.

Author Biographies

  • Jianhan Liao

    Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200062, China

  • Xiaoxin Shi

    School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang, Shanghai, 200240, ChinaSchool of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang, Shanghai, 200240, China

  • Ya Gao

    School of Mathematics, Physics and Statistics, Shanghai University of Engineering Science, Shanghai 201620, China

  • Xingyu Wang

    NYU-ECNU Center for Computational Chemistry, NYU Shanghai, Shanghai, 200062, China

  • Tong Zhu

    Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200062, China

    NYU-ECNU Center for Computational Chemistry, NYU Shanghai, Shanghai, 200062, China

    Shanghai Innovation Institute, Shanghai, 200003 China

    AI for Science Institute, Beijing, 100080, P.R. China.

Published

2025-10-06

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How to Cite

Application of Modern Intelligent Algorithms in Retrosynthesis Prediction. (2025). Communications in Computational Chemistry, 7(4), 289-310. https://doi.org/10.4208/cicc.2025.153.01